R
Completed
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Section 1: Getting Started
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Section 2: Core Syntax
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Section 3: Data Structures
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Section 4: Data Manipulation
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Section 5: Visualization and Statistics
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Section 6: Advanced R
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Section 7: Practical Projects
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Section 8: Interview Practice
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Section 9: More Practice Exercises
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Section 10: Shiny Apps in Depth
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Section 11: More Data Wrangling
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Section 12: Tidyverse Deep Dive
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Section 13: Statistical Modeling Deep Dive
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Section 14: Machine Learning in R
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Section 15: R Visualization Deep Dive
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Section 16: R Package Development Deep Dive
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Section 17: R for Reproducible Research
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Section 18: R and Databases
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Section 19: R Performance Optimization
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Section 20: Bioinformatics and Specialized R
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Section 21: More Shiny Practice
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Section 22: More Practice Exercises
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Section 23: R Data Structures Deep Dive
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Section 24: More Interview and Review
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Section 25: R for Business Analytics
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Section 26: R Text Mining and NLP
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Section 27: R Spatial Data Analysis
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Section 28: R Deep Learning
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Section 29: Advanced Statistical Techniques
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Section 30: R Object Systems Deep Dive
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Section 31: R Environments and Metaprogramming
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Section 32: R for Finance
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Section 33: R for Clinical and Health Data
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Section 34: More Shiny Advanced Practice
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Section 35: R Data Cleaning Deep Dive
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Section 36: R Reporting Automation
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Section 37: More Practical Projects Round 2
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Section 38: R Ecosystem and Career
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Section 39: More Visualization Practice
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Section 40: R for Experimentation
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Section 41: R for Genomics and Bioinformatics Deep Dive
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Section 42: R for Marketing Analytics
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Section 43: R Data Import/Export Deep Dive
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Section 44: R String Processing Deep Dive
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Section 45: R for Actuarial and Insurance Analytics
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Section 46: R Testing and Quality Assurance Deep Dive
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Section 47: R Version Control and Collaboration
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Section 48: R Advanced Functional Programming
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Section 49: R for Supply Chain and Operations
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Section 50: More Practice Exercises Round 3
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Section 51: R Dashboards and BI Integration
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Section 52: R Data Governance and Ethics
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Section 53: More Modeling Practice
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Section 54: R Final Capstone Projects
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Section 55: R for Sports Analytics
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Section 56: More Interview Practice Round 2
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Section 57: R Networking and APIs
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Section 58: R for Environmental Science
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Section 59: R Notebook and Documentation Practices
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Section 60: More Data Wrangling Mastery
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Section 61: R for A/B Testing at Scale
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Section 62: R Package Ecosystem Deep Dive
212: Model Deployment as a Plumber API
I once worked with a lead data scientist who had built a masterpiece of a churn prediction model. It was a high-performing random forest that could tell you exactly which customers were about to leave with startling accuracy. The problem? The model lived in a series of fragmented .Rmd files on his local machine. When the product team wanted to integrate those predictions into the customer dashboard, he tried to explain that they could just "load the .rds file in an R session." The frontend developers, who were building in React, looked at him like he was speaking a dead language. They didn't want an R session; they wanted a URL they could send a JSON payload to and get a probability back in milliseconds.
This is the "last mile" problem of data science. You can have the most accurate model in the world, but if it isn't accessible as a service, it's essentially a fancy spreadsheet. In the R ecosystem, the plumber package is the bridge. It allows you to take a standard R function and expose it as a REST API endpoint without requiring you to become a full-stack web developer.
Turning R Functions into Endpoints
The magic of plumber lies in its use of special comments, often called decorators. Instead of writing complex routing logic, you write your R functions as usual and add specific comments above them. These comments tell plumber how to map an incoming HTTP request to your function.
For a model deployment, you'll almost always use #* @post. While #* @get is great for fetching a static value, @post allows the client to send a body of data—like a customer's usage metrics—which your model then uses to make a prediction. Here is how a basic prediction endpoint looks:
#* @post /predict
#* @param tenure The length of time the customer has been with us
#* @param monthly_charges The monthly bill amount
function(tenure, monthly_charges) {
# Assume 'churn_model' is already loaded in the environment
new_data <- data.frame(tenure = as.numeric(tenure),
monthly_charges = as.numeric(monthly_charges))
prediction <- predict(churn_model, new_data, type = "response")
return(list(churn_probability = prediction))
}
I should mention a common mistake I see: forgetting to cast inputs. Plumber receives arguments as strings by default. If your model expects a numeric value and you pass it a string, your API will crash with a cryptic error. Always wrap your inputs in as.numeric() or as.factor() to be safe.
Optimizing Model Loading and the Router
If you load your model .rds file inside the function, your API will be painfully slow because it will read the file from the disk every single time someone hits the endpoint. That's a recipe for a server crash under any real load. Instead, you want to load the model into the environment before the API starts running.
The standard workflow is to create a separate file (e.g., plumber.R) where you load your dependencies and your model at the top of the script. When you call plumb("plumber.R") in your main R session, the model is loaded once into memory, and every subsequent request to the /predict endpoint uses that pre-loaded object.
# plumber.R
library(randomForest)
churn_model <- readRDS("models/churn_rf_v1.rds")
#* @post /predict
function(req) {
# req$body contains the parsed JSON input
input_data <- as.data.frame(req$body)
predict(churn_model, input_data)
}
Testing via the Swagger UI
One of the best features of plumber is that it automatically generates a Swagger UI. Once you run your API using pr_run(pr), you don't need to struggle with curl commands or external tools like Postman just to see if it works. You can navigate to the API URL in your browser, and you'll see a fully interactive documentation page.
This UI allows you to input parameters directly into the browser and hit "Execute" to see the JSON response. It's an incredible tool for collaborating with frontend engineers; you can simply send them the Swagger link, and they can test the API's inputs and outputs themselves without ever touching a line of R code.
📋 Practical Task
Deploying a Wine Quality Prediction API
You have been provided with a pre-trained model file named wine_model.rds (a model that predicts wine quality based on acidity, sugar, and alcohol content). Your task is to create a Plumber API that allows a user to submit these chemical properties and receive a quality score.
Requirements:
- Create a file named
wine_api.R. - Load the
wine_model.rdsfile at the top of the script so it is only loaded once. - Create a
POSTendpoint at/score. - The endpoint must accept three parameters:
acidity,sugar, andalcohol. - Ensure the parameters are converted to numeric values before being passed to the
predict()function. - The API should return a list containing the final predicted score.
Verification: Once the API is running, use the Swagger UI to send a request with acidity = 0.7, sugar = 1.2, and alcohol = 11.5 and verify that you receive a numeric prediction in the JSON response.
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